PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487618.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 420aa    MW: 46356.8 Da    PI: 7.0912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1111.7e-34361622126
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            s+s+a+ +           
  XP_016487618.1  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptlgsvsvSASAANTS----------- 119
                     79**************************************************************55555554433322222222........... PP

             TCP  85 sssg...kaaksaa.kskksqksaasalnlakesrakarararert 126
                        +   +++++++ + +++++ ++ + n a  s+++a a+ r++t
  XP_016487618.1 120 ---NleqDQSQDENfTFHQENATTSLFDNAAGPSNKRAMATLRNET 162
                     ...1111112222212222222222223333333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3436141IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433896IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGDSQHQNHR TTSRLGLRST VGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTLGSVS VSASAANTSN  120
LEQDQSQDEN FTFHQENATT SLFDNAAGPS NKRAMATLRN ETNTSGSFLP PSLESDAIAD  180
TIKSFFPMGS STATNSSPMQ FQSFHQETNN MLSRTSSQNQ DLRLSLQFQD PILLHHQNQQ  240
AQHQHQHQHQ TNNHREELQA QVGHFTPLGF DSSACWSSMH QQQQPVGRVQ RLASWNDNRD  300
TTAQGGGYLF NSQPGQPPLL QQLFGGQNQF YTQRGPLQSS NTPSVRAWID PTSSAIAIAS  360
ADQAVLPMYH HPSTIPPGYG FASEIGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2108761e-116HM210876.1 Solanum melongena lanceolate gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795084.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016487618.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-104TCP4_ARATH; Transcription factor TCP4
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-92TCP family protein